Practical Metabolomics Course Development Resources

Joshua Kellogg

Practical Metabolomics Course Development Resources

Metabolomics is a highly interdisciplinary field and has undergone rapid advancement in the three decades since its inception. Scientists wishing to incorporate metabolomics in their research approaches must apply knowledge from a variety of disciplines, from analytical chemistry to multivariate statistics. However, educational and training opportunities are lacking, and many available resources are short-term in nature and focused on expanding the skillset of those already familiar with metabolomics principles, potentially overlooking those newer to the discipline. To address this gap, a graduate course was developed to provide a practical, hands-on approach to teach metabolomics concepts and methods. Centered around active-learning modules, supplemented with lectures, seminars, and tutorials, students are guided through all aspects of a metabolomics experiment, from experimental design to data collection, processing, analysis, and inference. Students have responded positively to this learner-centered approach and report a deep understanding of the material and confidence in using metabolomics protocols in future experiments.

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View: Metabolomics Annotated Bibliography.docx
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View: Metabolomics Course_README.txt
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View: Metabolomics Data Project.docx
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View: Mouse Metabolomics Dataset_metadata.xlsx
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View: Mouse Metabolomics Dataset.zip
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View: Software Requirements.docx
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View: Workshop1-MS Data Processing-Sample Student Results.csv
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View: Workshop1-MZmine_parameters.csv
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View: Workshop2-Statistical Analysis-Sample Student Results.zip
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View: Workshop3-Data Annotation-Sample Student Results.tar
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Metadata

Work Title	Practical Metabolomics Course Development Resources
Access	Open Access
Creators	Joshua Kellogg
License	CC BY-ND 4.0 (Attribution-NoDerivatives)
Work Type	Project
Acknowledgments	We are grateful for to the Huck Institutes’ Metabolomics Core Facility Director Dr. Ashley Shay (RRID:SCR_023864), and the Penn State NMR Facility Director Dr. Tapas Mal for their enthusiastic support of the students and course. This work is supported by the USDA National Institute of Food and Agriculture and Hatch Appropriations under Project #PEN04956 and Accession #7006496.
Publication Date	2025
Subject	Metabolomics Mass Spectrometry Chemical Education Analytical Chemistry Course Design Chemometrics Inquiry-based Learning
Language	English
Deposited	May 05, 2025

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Metabolomics Course Resources

2025-02-28

Practical Metabolomics Course Development Resources

Files

View: Manuscript Presentation Rubric.docx

View: Metabolomics Annotated Bibliography.docx

View: Metabolomics Course_README.txt

View: Metabolomics Data Project.docx

View: Mouse Metabolomics Dataset_metadata.xlsx

View: Mouse Metabolomics Dataset.zip

View: Software Requirements.docx

View: Workshop1-MS Data Processing-Sample Student Results.csv

View: Workshop1-MZmine_parameters.csv

View: Workshop2-Statistical Analysis-Sample Student Results.zip

View: Workshop3-Data Annotation-Sample Student Results.tar

Metadata

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Metabolomics Course Resources

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Practical Metabolomics Course Development Resources

Files

Metadata

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Work History

Version 1 published

Version 2 published

Version 1
published

Version 2
published