Data for tRNA Structure-seq paper

Ryota Yamagami; Philip Bevilacqua

Data for tRNA Structure-seq paper

This is the raw data used in the tRNA Structure-seq paper.

Files

Fig1.zip

size: 9.68 MB | mime_type: application/zip | date: 2022-03-29
Fig2.zip

size: 3.68 MB | mime_type: application/zip | date: 2022-05-01 | sha256: d4708b2
Fig3.zip

size: 5.23 MB | mime_type: application/zip | date: 2022-03-29 | sha256: b6e33ae
Fig4.zip

size: 2.49 MB | mime_type: application/zip | date: 2022-03-29 | sha256: be3e3f3
Fig5.zip

size: 3.86 MB | mime_type: application/zip | date: 2022-03-29 | sha256: 0cc4f94
Lib10_S10_R1_001.fastq.gz

size: 41.9 MB | mime_type: application/gzip | date: 2022-03-16 | sha256: d0ef47d
Lib15_S15_R1_001.fastq.gz

size: 652 MB | mime_type: application/gzip | date: 2022-03-16 | sha256: 9cba8a9
Lib16_S16_R1_001.fastq.gz

size: 681 MB | mime_type: application/gzip | date: 2022-03-16 | sha256: c0d74df
Lib17_S17_R1_001.fastq.gz

size: 661 MB | mime_type: application/gzip | date: 2022-03-16 | sha256: bfe55ff
Lib18_S18_R1_001.fastq.gz

size: 617 MB | mime_type: application/gzip | date: 2022-03-16 | sha256: 548f8e4
Lib19_S19_R1_001.fastq.gz

size: 567 MB | mime_type: application/gzip | date: 2022-03-16 | sha256: de91652
Lib1_S1_R1_001.fastq.gz

size: 54.3 MB | mime_type: application/gzip | date: 2022-03-16 | sha256: c31d188
Lib20_S20_R1_001.fastq.gz

size: 602 MB | mime_type: application/gzip | date: 2022-03-16 | sha256: 5e057f7
Lib22_S22_R1_001.fastq.gz

size: 456 MB | mime_type: application/gzip | date: 2022-03-16 | sha256: 9d7e2d0
Lib23_S23_R1_001.fastq.gz

size: 686 MB | mime_type: application/gzip | date: 2022-03-16 | sha256: 831d802
Lib25_S25_R1_001.fastq.gz

size: 624 MB | mime_type: application/gzip | date: 2022-03-16 | sha256: c754363
Lib26_S26_R1_001.fastq.gz

size: 598 MB | mime_type: application/gzip | date: 2022-03-16 | sha256: 386bd7f
Lib27_S27_R1_001.fastq.gz

size: 668 MB | mime_type: application/gzip | date: 2022-03-16 | sha256: 6ea0386
Lib28_S28_R1_001.fastq.gz

size: 611 MB | mime_type: application/gzip | date: 2022-03-16 | sha256: 80633dc
Lib29_S29_R1_001.fastq.gz

size: 616 MB | mime_type: application/gzip | date: 2022-03-16 | sha256: 5a58271
Lib2_S2_R1_001.fastq.gz

size: 48.1 MB | mime_type: application/gzip | date: 2022-03-16 | sha256: 18368fa
Lib30_S30_R1_001.fastq.gz

size: 555 MB | mime_type: application/gzip | date: 2022-03-16 | sha256: af41ae0
Lib31_S31_R1_001.fastq.gz

size: 587 MB | mime_type: application/gzip | date: 2022-03-16 | sha256: 99f0126
Lib32_S32_R1_001.fastq.gz

size: 635 MB | mime_type: application/gzip | date: 2022-03-16 | sha256: 107e9da
Lib33_S33_R1_001.fastq.gz

size: 571 MB | mime_type: application/gzip | date: 2022-03-16 | sha256: 040591c
Lib34_S34_R1_001.fastq.gz

size: 600 MB | mime_type: application/gzip | date: 2022-03-16 | sha256: d45e64c
Lib35_S35_R1_001.fastq.gz

size: 710 MB | mime_type: application/gzip | date: 2022-03-16 | sha256: c0b9e82
Lib36_S36_R1_001.fastq.gz

size: 763 MB | mime_type: application/gzip | date: 2022-03-16 | sha256: 2b7c7ca
Lib37_S37_R1_001.fastq.gz

size: 651 MB | mime_type: application/gzip | date: 2022-03-16 | sha256: 1a5678c
Lib38_S38_R1_001.fastq.gz

size: 787 MB | mime_type: application/gzip | date: 2022-03-16 | sha256: b05871f
Lib39_S39_R1_001.fastq.gz

size: 537 MB | mime_type: application/gzip | date: 2022-03-16 | sha256: 304a499
Lib3_S3_R1_001.fastq.gz

size: 37 MB | mime_type: application/gzip | date: 2022-03-16 | sha256: 363824d
Lib40_S40_R1_001.fastq.gz

size: 471 MB | mime_type: application/gzip | date: 2022-03-16 | sha256: b916c51
Lib41_S41_R1_001.fastq.gz

size: 428 MB | mime_type: application/gzip | date: 2022-03-16 | sha256: 34df5ec
Lib42_S42_R1_001.fastq.gz

size: 495 MB | mime_type: application/gzip | date: 2022-03-16 | sha256: ca892b6
Lib4_S4_R1_001.fastq.gz

size: 39 MB | mime_type: application/gzip | date: 2022-03-16 | sha256: bf802c5
Lib5_S5_R1_001.fastq.gz

size: 30.5 MB | mime_type: application/gzip | date: 2022-03-16 | sha256: 7ffa7f5
Lib6_S6_R1_001.fastq.gz

size: 52.9 MB | mime_type: application/gzip | date: 2022-03-16 | sha256: 5326926
Lib7_S7_R1_001.fastq.gz

size: 47.5 MB | mime_type: application/gzip | date: 2022-03-16 | sha256: 8054090
Lib8_S8_R1_001.fastq.gz

size: 50.4 MB | mime_type: application/gzip | date: 2022-03-16 | sha256: faa894b
Lib9_S9_R1_001.fastq.gz

size: 54.1 MB | mime_type: application/gzip | date: 2022-03-16 | sha256: 650d364
SFig10.zip

size: 2.29 MB | mime_type: application/zip | date: 2022-03-29 | sha256: fb8a303
SFig11.zip

size: 1.47 MB | mime_type: application/zip | date: 2022-03-29 | sha256: 2dca3f1
SFig12_mutational_profiling_to_measure_modification.zip

size: 1.61 MB | mime_type: application/zip | date: 2022-03-29 | sha256: 8463045
SFig13_MS2_validation.zip

size: 4.6 MB | mime_type: application/zip | date: 2022-03-29 | sha256: 21c3271
SFig14_MS2_validation.zip

size: 4.6 MB | mime_type: application/zip | date: 2022-03-29 | sha256: 1e18284
SFig15_Bio_replicate_correl.zip

size: 1.51 MB | mime_type: application/zip | date: 2022-03-29 | sha256: 618dfc5
SFig16_compare_mutational_profiling_with_LC-MSMS_data.zip

size: 3.87 MB | mime_type: application/zip | date: 2022-03-29 | sha256: 80d310f
SFig17_count_codons_in_E_coli_BW25113.zip

size: 11.6 MB | mime_type: application/zip | date: 2022-03-29 | sha256: 9cd5c36
SFig1.zip

size: 10.9 MB | mime_type: application/zip | date: 2022-03-29 | sha256: a6d6558
SFig2.zip

size: 9.04 MB | mime_type: application/zip | date: 2022-03-29 | sha256: 7cda9db
SFig3.zip

size: 1.94 MB | mime_type: application/zip | date: 2022-03-29 | sha256: 44cd527
SFig4.zip

size: 1.29 MB | mime_type: application/zip | date: 2022-03-29 | sha256: a9bf93f
SFig5.zip

size: 17.2 MB | mime_type: application/zip | date: 2022-03-29 | sha256: 569f70d
SFig6.zip

size: 2.84 MB | mime_type: application/zip | date: 2022-03-29 | sha256: 875b281
SFig7.zip

size: 1.38 MB | mime_type: application/zip | date: 2022-03-29 | sha256: 2da4552
SFig8.zip

size: 2.57 MB | mime_type: application/zip | date: 2022-03-29 | sha256: 1434647
SFig9.zip

size: 7.81 MB | mime_type: application/zip | date: 2022-03-29 | sha256: df2de2f
tRNA_seq_1_S1_R1_001.fastq.gz

size: 30.2 MB | mime_type: application/gzip | date: 2022-03-16 | sha256: b69eed9
tRNA_seq_2_S2_R1_001.fastq.gz

size: 26.5 MB | mime_type: application/gzip | date: 2022-03-16 | sha256: e2b0087
tRNA_seq_5_S5_R1_001.fastq.gz

size: 653 MB | mime_type: application/gzip | date: 2022-03-16 | sha256: 7b91b6b
tRNA_seq_6_S6_R1_001.fastq.gz

size: 623 MB | mime_type: application/gzip | date: 2022-03-16 | sha256: f05e3d6
tRNA_seq_7_S7_R1_001.fastq.gz

size: 805 MB | mime_type: application/gzip | date: 2022-03-16 | sha256: f0af165
tRNA_seq_9_S9_R1_001.fastq.gz

size: 759 MB | mime_type: application/gzip | date: 2022-03-16 | sha256: 27166f5
Z_README.rtf

size: 21.5 KB | mime_type: text/rtf | date: 2022-03-29 | sha256: 54826c1

Metadata

Work Title	Data for tRNA Structure-seq paper
Access	Open Access
Creators	Ryota Yamagami Philip Bevilacqua
License	CC BY 4.0 (Attribution)
Work Type	Research Paper
Publication Date	2022
Deposited	March 16, 2022

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Work History

Version 1
published

Created

March 16, 2022 02:51 by rxy33
Added Creator Ryota Yamagami

March 16, 2022 02:53 by rxy33
Added Creator Philip Bevilacqua

March 16, 2022 02:53 by rxy33
Added tRNA_seq_1_S1_R1_001.fastq.gz

March 16, 2022 03:10 by rxy33
Added tRNA_seq_2_S2_R1_001.fastq.gz

March 16, 2022 03:10 by rxy33
Added tRNA_seq_5_S5_R1_001.fastq.gz

March 16, 2022 03:10 by rxy33
Added tRNA_seq_6_S6_R1_001.fastq.gz

March 16, 2022 03:10 by rxy33
Added tRNA_seq_7_S7_R1_001.fastq.gz

March 16, 2022 03:10 by rxy33
Added tRNA_seq_9_S9_R1_001.fastq.gz

March 16, 2022 03:10 by rxy33
Added Lib1_S1_R1_001.fastq.gz

March 16, 2022 03:10 by rxy33
Added Lib2_S2_R1_001.fastq.gz

March 16, 2022 03:10 by rxy33
Added Lib3_S3_R1_001.fastq.gz

March 16, 2022 03:10 by rxy33
Added Lib4_S4_R1_001.fastq.gz

March 16, 2022 03:10 by rxy33
Added Lib5_S5_R1_001.fastq.gz

March 16, 2022 03:10 by rxy33
Added Lib6_S6_R1_001.fastq.gz

March 16, 2022 03:10 by rxy33
Added Lib7_S7_R1_001.fastq.gz

March 16, 2022 03:10 by rxy33
Added Lib8_S8_R1_001.fastq.gz

March 16, 2022 03:10 by rxy33
Added Lib9_S9_R1_001.fastq.gz

March 16, 2022 03:10 by rxy33
Added Lib10_S10_R1_001.fastq.gz

March 16, 2022 03:10 by rxy33
Added Lib15_S15_R1_001.fastq.gz

March 16, 2022 03:10 by rxy33
Added Lib16_S16_R1_001.fastq.gz

March 16, 2022 03:10 by rxy33
Added Lib17_S17_R1_001.fastq.gz

March 16, 2022 03:10 by rxy33
Added Lib18_S18_R1_001.fastq.gz

March 16, 2022 03:10 by rxy33
Added Lib19_S19_R1_001.fastq.gz

March 16, 2022 03:10 by rxy33
Added Lib20_S20_R1_001.fastq.gz

March 16, 2022 03:10 by rxy33
Added Lib22_S22_R1_001.fastq.gz

March 16, 2022 03:10 by rxy33
Added Lib23_S23_R1_001.fastq.gz

March 16, 2022 03:10 by rxy33
Added Lib25_S25_R1_001.fastq.gz

March 16, 2022 03:10 by rxy33
Added Lib26_S26_R1_001.fastq.gz

March 16, 2022 03:10 by rxy33
Added Lib27_S27_R1_001.fastq.gz

March 16, 2022 03:10 by rxy33
Added Lib28_S28_R1_001.fastq.gz

March 16, 2022 03:10 by rxy33
Added Lib29_S29_R1_001.fastq.gz

March 16, 2022 03:10 by rxy33
Added Lib30_S30_R1_001.fastq.gz

March 16, 2022 03:10 by rxy33
Added Lib31_S31_R1_001.fastq.gz

March 16, 2022 03:10 by rxy33
Added Lib32_S32_R1_001.fastq.gz

March 16, 2022 03:10 by rxy33
Added Lib33_S33_R1_001.fastq.gz

March 16, 2022 03:10 by rxy33
Added Lib34_S34_R1_001.fastq.gz

March 16, 2022 03:10 by rxy33
Added Lib35_S35_R1_001.fastq.gz

March 16, 2022 03:10 by rxy33
Added Lib36_S36_R1_001.fastq.gz

March 16, 2022 03:10 by rxy33
Added Lib37_S37_R1_001.fastq.gz

March 16, 2022 03:10 by rxy33
Added Lib38_S38_R1_001.fastq.gz

March 16, 2022 03:10 by rxy33
Added Lib39_S39_R1_001.fastq.gz

March 16, 2022 03:10 by rxy33
Added Lib40_S40_R1_001.fastq.gz

March 16, 2022 03:10 by rxy33
Added Lib41_S41_R1_001.fastq.gz

March 16, 2022 03:10 by rxy33
Added Lib42_S42_R1_001.fastq.gz

March 16, 2022 03:10 by rxy33
Updated Publication Date, License Show Changes

March 16, 2022 03:11 by rxy33
Publication Date
- 2022
License
- https://creativecommons.org/licenses/by/4.0/
Added Code_Fig1b.R

March 29, 2022 10:11 by rxy33
Added Figure1.eps

March 29, 2022 10:11 by rxy33
Added Data_Fig1b_yeast_tRNAPhe_T7_invitro_profile.txt

March 29, 2022 10:11 by rxy33
Added Data_Fig1b_yeast_tRNAPhe_T7_invitro_rate.csv

March 29, 2022 10:11 by rxy33
Added Data_Fig1e_yeast_tRNA_T7_invitro_DMS.xlsx

March 29, 2022 10:11 by rxy33
Added Data_Fig1g_yeast_tRNAPhe_native_mutation.xlsx

March 29, 2022 10:11 by rxy33
Deleted Code_Fig1b.R

March 29, 2022 10:11 by rxy33
Deleted Data_Fig1b_yeast_tRNAPhe_T7_invitro_profile.txt

March 29, 2022 10:11 by rxy33
Deleted Data_Fig1b_yeast_tRNAPhe_T7_invitro_rate.csv

March 29, 2022 10:11 by rxy33
Deleted Data_Fig1e_yeast_tRNA_T7_invitro_DMS.xlsx

March 29, 2022 10:12 by rxy33
Deleted Data_Fig1g_yeast_tRNAPhe_native_mutation.xlsx

March 29, 2022 10:12 by rxy33
Deleted Figure1.eps

March 29, 2022 10:12 by rxy33
Added Fig1.zip

March 29, 2022 10:18 by rxy33
Added Fig2.zip

March 29, 2022 10:18 by rxy33
Added Fig3.zip

March 29, 2022 10:18 by rxy33
Added Fig4.zip

March 29, 2022 10:18 by rxy33
Added Fig5.zip

March 29, 2022 10:18 by rxy33
Added SFig1.zip

March 29, 2022 10:18 by rxy33
Added SFig2.zip

March 29, 2022 10:18 by rxy33
Added SFig3.zip

March 29, 2022 10:18 by rxy33
Added SFig4.zip

March 29, 2022 10:18 by rxy33
Added SFig5.zip

March 29, 2022 10:18 by rxy33
Added SFig6.zip

March 29, 2022 10:18 by rxy33
Added SFig7.zip

March 29, 2022 10:18 by rxy33
Added SFig8.zip

March 29, 2022 10:18 by rxy33
Added SFig9.zip

March 29, 2022 10:18 by rxy33
Added SFig10.zip

March 29, 2022 10:18 by rxy33
Added SFig11.zip

March 29, 2022 10:18 by rxy33
Added SFig12_mutational_profiling_to_measure_modification.zip

March 29, 2022 10:18 by rxy33
Added SFig13_MS2_validation.zip

March 29, 2022 10:18 by rxy33
Added SFig14_MS2_validation.zip

March 29, 2022 10:18 by rxy33
Added SFig15_Bio_replicate_correl.zip

March 29, 2022 10:18 by rxy33
Added SFig16_compare_mutational_profiling_with_LC-MSMS_data.zip

March 29, 2022 10:18 by rxy33
Added SFig17_count_codons_in_E_coli_BW25113.zip

March 29, 2022 10:18 by rxy33
Added Z_README.rtf

March 29, 2022 10:18 by rxy33
Published

April 03, 2022 22:22 by rxy33

Version 2
published

Created

May 01, 2022 20:43 by rxy33
Deleted Fig2.zip

May 01, 2022 20:47 by rxy33
Added Fig2.zip

May 01, 2022 20:47 by rxy33
Published

May 01, 2022 20:52 by rxy33

Data for tRNA Structure-seq paper

Files

Metadata

Versions

Analytics

Collections

Work History

Version 1 published

Version 2 published

Version 1
published

Version 2
published