Amino acid alignments for unique variants observed in v29 from Shipley et al, 2018: Genome-wide surveillance of genital herpes simplex virus type 1 from multiple anatomic sites over time
Data to accompany Supplemental Table 3: Unique amino acid (AA) variants identified in all v.29 genomes compared to data derived from the HSV-1 strains listed in Supplemental Table 2, of this manuscript: Shipley, Mackenzie M, Daniel W Renner, Mariliis Ott, David C Bloom, David M Koelle, Christine Johnston, and Moriah L Szpara. “Genome-Wide Surveillance of Genital Herpes Simplex Virus Type 1 from Multiple Anatomic Sites over Time.” The Journal of Infectious Diseases 218, no. 4 (June 18, 2018): 595–605. https://doi.org/10.1093/infdis/jiy216.
Citation
Files
-
View: v.29_unique_AA_variants_gene_RL2.aln
Download: v.29_unique_AA_variants_gene_RL2.aln
View: v.29_unique_AA_variants_gene_UL21.aln
Download: v.29_unique_AA_variants_gene_UL21.aln
View: v.29_unique_AA_variants_gene_UL22.aln
Download: v.29_unique_AA_variants_gene_UL22.aln
View: v.29_unique_AA_variants_gene_UL26.5.aln
Download: v.29_unique_AA_variants_gene_UL26.5.aln
View: v.29_unique_AA_variants_gene_UL26.aln
Download: v.29_unique_AA_variants_gene_UL26.aln
View: v.29_unique_AA_variants_gene_UL2.aln
Download: v.29_unique_AA_variants_gene_UL2.aln
View: v.29_unique_AA_variants_gene_UL30.aln
Download: v.29_unique_AA_variants_gene_UL30.aln
View: v.29_unique_AA_variants_gene_UL36.aln
Download: v.29_unique_AA_variants_gene_UL36.aln
View: v.29_unique_AA_variants_gene_UL37.aln
Download: v.29_unique_AA_variants_gene_UL37.aln
View: v.29_unique_AA_variants_gene_UL38.aln
Download: v.29_unique_AA_variants_gene_UL38.aln
View: v.29_unique_AA_variants_gene_UL39.aln
Download: v.29_unique_AA_variants_gene_UL39.aln
View: v.29_unique_AA_variants_gene_UL40.aln
Download: v.29_unique_AA_variants_gene_UL40.aln
View: v.29_unique_AA_variants_gene_UL42.aln
Download: v.29_unique_AA_variants_gene_UL42.aln
View: v.29_unique_AA_variants_gene_UL44.aln
Download: v.29_unique_AA_variants_gene_UL44.aln
View: v.29_unique_AA_variants_gene_UL45.aln
Download: v.29_unique_AA_variants_gene_UL45.aln
View: v.29_unique_AA_variants_gene_UL46.aln
Download: v.29_unique_AA_variants_gene_UL46.aln
View: v.29_unique_AA_variants_gene_UL49.aln
Download: v.29_unique_AA_variants_gene_UL49.aln
View: v.29_unique_AA_variants_gene_UL52.aln
Download: v.29_unique_AA_variants_gene_UL52.aln
View: v.29_unique_AA_variants_gene_UL54.aln
Download: v.29_unique_AA_variants_gene_UL54.aln
View: v.29_unique_AA_variants_gene_UL6.aln
Download: v.29_unique_AA_variants_gene_UL6.aln
Metadata
Work Title Amino acid alignments for unique variants observed in v29 from Shipley et al, 2018: Genome-wide surveillance of genital herpes simplex virus type 1 from multiple anatomic sites over time Access Creators - MORIAH LOUISE SZPARA
Keyword - Amino acid alignments
License CC BY-NC-ND 4.0 (Attribution-NonCommercial-NoDerivatives) Work Type Dataset Publication Date 2018 DOI doi:10.26207/h8tf-3e58 Related URLs Deposited August 09, 2019 Versions
Analytics
Collections
Work History
Version 1
published-
Created
-
Added
v.29_unique_AA_variants_gene_UL39.aln -
Added
v.29_unique_AA_variants_gene_UL30.aln -
Added
v.29_unique_AA_variants_gene_UL52.aln -
Added
v.29_unique_AA_variants_gene_UL44.aln -
Added
v.29_unique_AA_variants_gene_UL42.aln -
Added
v.29_unique_AA_variants_gene_UL54.aln -
Added
v.29_unique_AA_variants_gene_UL36.aln -
Added
v.29_unique_AA_variants_gene_UL37.aln -
Added
v.29_unique_AA_variants_gene_UL26.5.aln -
Added
v.29_unique_AA_variants_gene_UL38.aln -
Added
v.29_unique_AA_variants_gene_UL40.aln -
Added
v.29_unqiue_AA_variants_gene_UL43.aln -
Added
v.29_unique_AA_variants_gene_UL22.aln -
Added
v.29_unique_AA_variants_gene_UL46.aln -
Added
v.29_unique_AA_variants_gene_UL2.aln -
Added
v.29_unique_AA_variants_gene_UL45.aln -
Added
v.29_unique_AA_variants_gene_UL26.aln -
Added
v.29_unique_AA_variants_gene_RL2.aln -
Added
v.29_unique_AA_variants_gene_UL49.aln -
Added
v.29_unique_AA_variants_gene_UL21.aln -
Added
v.29_unique_AA_variants_gene_UL6.aln -
Added Creator MORIAH LOUISE SZPARA
-
Published
-
Updated Related URLs, Publication Date Show ChangesRelated URLsPublication Date
- https://scholarsphere.psu.edu/resources/7af7a69c-91e3-44ad-83d9-52ca3579e6b6, https://doi.org/10.1093/infdis/jiy216
- 2018
-
Updated
