FastQCFastQC Report
Sun 4 May 2014
HSV-KOSsyn_2.fastq

Summary

[OK] Basic Statistics

Measure Value
Filename HSV-KOSsyn_2.fastq
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 22860146
Filtered Sequences 0
Sequence length 101
%GC 66

[FAIL] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[WARN] Per base sequence content

Per base sequence content

[OK] Per base GC content

Per base GC content graph

[WARN] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[FAIL] Sequence Duplication Levels

Duplication level graph

[WARN] Overrepresented sequences

Sequence Count Percentage Possible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 95342 0.41706645268144826 No Hit

[FAIL] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
AAAAA 2918350 9.181697 11.485849 1
TTTTT 2721940 8.817771 10.928355 95-97
ATAAA 1471905 4.658052 5.964383 3
TTTAT 1442770 4.6466336 6.2068777 1
TGTTT 2427510 4.0196047 4.7253556 1
TAAAA 1267915 4.0124965 4.7803144 1
AAACA 2450445 4.0036564 4.892394 1
TTTTA 1172930 3.7775779 4.6352396 1
AAAAC 2102365 3.4349463 4.220314 1
TTATT 1035855 3.3361094 4.5633755 1
GTTTT 1997935 3.3082907 3.7799244 95-97
AATAA 1017470 3.219928 4.51362 2
AAAAT 996490 3.1535335 4.20158 1