FastQCFastQC Report
Sun 4 May 2014
HSV-KOSsyn_1.fastq

Summary

[OK] Basic Statistics

Measure Value
Filename HSV-KOSsyn_1.fastq
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 22860146
Filtered Sequences 0
Sequence length 101
%GC 65

[FAIL] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[WARN] Per base sequence content

Per base sequence content

[OK] Per base GC content

Per base GC content graph

[OK] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[FAIL] Sequence Duplication Levels

Duplication level graph

[OK] Overrepresented sequences

No overrepresented sequences

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
TTTTT 2651470 8.449806 9.993108 10-14
AAAAA 2693580 8.307145 10.998197 1
TTTAT 1471230 4.6579304 6.453674 1
ATAAA 1478015 4.5882645 6.5397964 3
TGTTT 2445580 4.00662 4.9739337 1
AAACA 2446360 3.9258986 4.7310295 2
TAAAA 1240350 3.850471 4.975605 9
TTTTA 1173525 3.7153928 5.0214047 1
TTATT 1058115 3.3500037 4.7475657 1
AAAAC 2064450 3.3130121 4.117762 2
GTTTT 1959520 3.2103028 3.854978 7
AATAA 1031375 3.2017412 4.8807597 2
AAAAT 982800 3.0509474 4.2266893 1