FastQCFastQC Report
Mon 5 May 2014
paired_decon_artifact_trim_clip_HSV-KOSsyn_2.fastq

Summary

[OK] Basic Statistics

Measure Value
Filename paired_decon_artifact_trim_clip_HSV-KOSsyn_2.fastq
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 17850556
Filtered Sequences 0
Sequence length 30-101
%GC 65

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[WARN] Per base sequence content

Per base sequence content

[OK] Per base GC content

Per base GC content graph

[OK] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[WARN] Sequence Length Distribution

Sequence length distribution

[FAIL] Sequence Duplication Levels

Duplication level graph

[OK] Overrepresented sequences

No overrepresented sequences

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
TTTTT 1410740 6.8570232 9.493303 95-97
AAAAA 1333055 6.735454 8.883351 1
ATAAA 865860 4.341107 5.487127 3
TTTAT 871900 4.2709193 5.6495557 1
TGTTT 1615375 4.1554236 5.4272513 95-97
AAACA 1532710 4.02571 4.9036403 1
TAAAA 709770 3.5585287 4.454563 95-97
TTTTA 690155 3.3806586 4.4793763 95-97
AAAAC 1224775 3.2169092 4.1320267 2
GTTTT 1213510 3.1216578 3.7350621 95-97