FastQCFastQC Report
Mon 5 May 2014
paired_decon_artifact_trim_clip_HSV-KOSsyn_1.fastq

Summary

[OK] Basic Statistics

Measure Value
Filename paired_decon_artifact_trim_clip_HSV-KOSsyn_1.fastq
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 17850556
Filtered Sequences 0
Sequence length 30-101
%GC 65

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[WARN] Per base sequence content

Per base sequence content

[OK] Per base GC content

Per base GC content graph

[OK] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[WARN] Sequence Length Distribution

Sequence length distribution

[FAIL] Sequence Duplication Levels

Duplication level graph

[OK] Overrepresented sequences

No overrepresented sequences

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
TTTTT 1394800 6.869974 9.33517 95-97
AAAAA 1293010 6.575054 8.4519005 1
ATAAA 857630 4.333378 5.5900526 3
TTTAT 869775 4.311426 6.0628877 1
TGTTT 1597995 4.1725736 5.3148828 95-97
AAACA 1503820 3.981637 4.6002975 2
TAAAA 697615 3.5248644 4.479137 9
TTTTA 681690 3.3790994 4.54625 1
AAAAC 1195010 3.1640065 3.9663136 1
GTTTT 1191150 3.1102483 3.7282343 1
TTATT 609180 3.0196714 4.3667445 2