Genome name | HSV-KOSsyn.fa |
Genome annotation | HSV-KOSsyn.gff |
Genome length | 135683 bp |
Genome name (with TRL/TRS) | full-length_HSV-KOSsyn.fa |
Genome annotation (with TRL/TRS) | full-length_HSV-KOSsyn.gff |
Genome length (with TRL/TRS) | 150970 bp |
Number of bases with >=100 depth support | 133371 (98.29%) |
Number of gaps | 3 |
Number of Ns | 721 |
Complete protein annotations | 71 |
Incomplete protein annotations | 3 |
Reference name | HSV-17_trimmed.fa |
Reference annotation | HSV-17_trimmed.gff |
gene_RL1: Gene|ORF|AA | No errors | gene_RL2: Gene|ORF|AA | No errors | gene_UL1: Gene|ORF|AA | No errors |
gene_UL2: Gene|ORF|AA | No errors | gene_UL3: Gene|ORF|AA | No errors | gene_UL4: Gene|ORF|AA | No errors |
gene_UL5: Gene|ORF|AA | No errors | gene_UL6: Gene|ORF|AA | No errors | gene_UL7: Gene|ORF|AA | No errors |
gene_UL8: Gene|ORF|AA | No errors | gene_UL9: Gene|ORF|AA | No errors | gene_UL10: Gene|ORF|AA | No errors |
gene_UL11: Gene|ORF|AA | No errors | gene_UL12: Gene|ORF|AA | No errors | gene_UL13: Gene|ORF|AA | No errors |
gene_UL14: Gene|ORF|AA | No errors | gene_UL15: Gene|ORF|AA | No errors | gene_UL16: Gene|ORF|AA | No errors |
gene_UL17: Gene|ORF|AA | No errors | gene_UL18: Gene|ORF|AA | No errors | gene_UL19: Gene|ORF|AA | No errors |
gene_UL20: Gene|ORF|AA | No errors | gene_UL21: Gene|ORF|AA | No errors | gene_UL22: Gene|ORF|AA | No errors |
gene_UL23: Gene|ORF|AA | No errors | gene_UL24: Gene|ORF|AA | No errors | gene_UL25: Gene|ORF|AA | No errors |
gene_UL26: Gene|ORF|AA | No errors | gene_UL26.5: Gene|ORF|AA | No errors | gene_UL27: Gene|ORF|AA | No errors |
gene_UL28: Gene|ORF|AA | No errors | gene_UL29: Gene|ORF|AA | No errors | gene_UL30: Gene|ORF|AA | No errors |
gene_UL31: Gene|ORF|AA | No errors | gene_UL32: Gene|ORF|AA | No errors | gene_UL33: Gene|ORF|AA | No errors |
gene_UL34: Gene|ORF|AA | No errors | gene_UL35: Gene|ORF|AA | No errors | gene_UL36: Gene|ORF|AA | No errors |
gene_UL37: Gene|ORF|AA | No errors | gene_UL38: Gene|ORF|AA | No errors | gene_UL39: Gene|ORF|AA | No errors |
gene_UL40: Gene|ORF|AA | No errors | gene_UL41: Gene|ORF|AA | No errors | gene_UL42: Gene|ORF|AA | No errors |
gene_UL43: Gene|ORF|AA | No errors | gene_UL44: Gene|ORF|AA | No errors | gene_UL45: Gene|ORF|AA | No errors |
gene_UL46: Gene|ORF|AA | No errors | gene_UL47: Gene|ORF|AA | No errors | gene_UL48: Gene|ORF|AA | No errors |
gene_UL49: Gene|ORF|AA | No errors | gene_UL49A: Gene|ORF|AA | No errors | gene_UL50: Gene|ORF|AA | No errors |
gene_UL51: Gene|ORF|AA | No errors | gene_UL52: Gene|ORF|AA | No errors | gene_UL53: Gene|ORF|AA | No errors |
gene_UL54: Gene|ORF|AA | No errors | gene_UL55: Gene|ORF|AA | No errors | gene_UL56: Gene|ORF|AA | No errors |
gene_US1: Gene|ORF|AA | No errors | gene_US2: Gene|ORF|AA | No errors | gene_US3: Gene|ORF|AA | No errors |
gene_US4: Gene|ORF|AA | No errors | gene_US5: Gene|ORF|AA | No errors | gene_US6: Gene|ORF|AA | No errors |
gene_US7: Gene|ORF|AA | No errors | gene_US8: Gene|ORF|AA | No errors | gene_US10: Gene|ORF|AA | No errors |
gene_US11: Gene|ORF|AA | No errors | gene_US12: Gene|ORF|AA | No errors |
gene_RS1: Gene|ORF|AA | (Gaps found) |
gene_US8A: Gene|ORF|AA | (Stop codon missing) |
gene_US9: Gene|ORF|AA | (Sample is more than 10% shorter than the reference) (Early stop codon found) |
gene_LAT: None | gene_US12_start_in_IRS: DNA | hsv1-mir-H1: DNA |
hsv1-mir-H2: DNA | hsv1-mir-H3: DNA | hsv1-mir-H4: DNA |
hsv1-mir-H5: DNA | hsv1-mir-H6: DNA | hsv1-mir-H7: DNA |
hsv1-mir-H8: DNA | hsv1-mir-H11: DNA | hsv1-mir-H12: DNA |
hsv1-mir-H13: DNA | hsv1-mir-H14: DNA | hsv1-mir-H16: DNA |
hsv1-mir-H18: DNA | hsv1-mir-H26: DNA | hsv1-mir-H27: DNA |
oriL: DNA | oriS: DNA | UL: None |
US: None | IRL: None | IRS: None |
a_prime: DNA |