Basic Statistics
Measure | Value |
---|---|
Filename | HSV-KOSsyn_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 22860146 |
Filtered Sequences | 0 |
Sequence length | 101 |
%GC | 65 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Kmer Content
Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TTTTT | 2651470 | 8.449806 | 9.993108 | 10-14 |
AAAAA | 2693580 | 8.307145 | 10.998197 | 1 |
TTTAT | 1471230 | 4.6579304 | 6.453674 | 1 |
ATAAA | 1478015 | 4.5882645 | 6.5397964 | 3 |
TGTTT | 2445580 | 4.00662 | 4.9739337 | 1 |
AAACA | 2446360 | 3.9258986 | 4.7310295 | 2 |
TAAAA | 1240350 | 3.850471 | 4.975605 | 9 |
TTTTA | 1173525 | 3.7153928 | 5.0214047 | 1 |
TTATT | 1058115 | 3.3500037 | 4.7475657 | 1 |
AAAAC | 2064450 | 3.3130121 | 4.117762 | 2 |
GTTTT | 1959520 | 3.2103028 | 3.854978 | 7 |
AATAA | 1031375 | 3.2017412 | 4.8807597 | 2 |
AAAAT | 982800 | 3.0509474 | 4.2266893 | 1 |