Basic Statistics
Measure | Value |
---|---|
Filename | paired_decon_artifact_trim_clip_HSV-KOSsyn_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 17850556 |
Filtered Sequences | 0 |
Sequence length | 30-101 |
%GC | 65 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Kmer Content
Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TTTTT | 1394800 | 6.869974 | 9.33517 | 95-97 |
AAAAA | 1293010 | 6.575054 | 8.4519005 | 1 |
ATAAA | 857630 | 4.333378 | 5.5900526 | 3 |
TTTAT | 869775 | 4.311426 | 6.0628877 | 1 |
TGTTT | 1597995 | 4.1725736 | 5.3148828 | 95-97 |
AAACA | 1503820 | 3.981637 | 4.6002975 | 2 |
TAAAA | 697615 | 3.5248644 | 4.479137 | 9 |
TTTTA | 681690 | 3.3790994 | 4.54625 | 1 |
AAAAC | 1195010 | 3.1640065 | 3.9663136 | 1 |
GTTTT | 1191150 | 3.1102483 | 3.7282343 | 1 |
TTATT | 609180 | 3.0196714 | 4.3667445 | 2 |