Basic Statistics
Measure | Value |
---|---|
Filename | paired_decon_artifact_trim_clip_HSV-KOSsyn_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 17850556 |
Filtered Sequences | 0 |
Sequence length | 30-101 |
%GC | 65 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Kmer Content
Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TTTTT | 1410740 | 6.8570232 | 9.493303 | 95-97 |
AAAAA | 1333055 | 6.735454 | 8.883351 | 1 |
ATAAA | 865860 | 4.341107 | 5.487127 | 3 |
TTTAT | 871900 | 4.2709193 | 5.6495557 | 1 |
TGTTT | 1615375 | 4.1554236 | 5.4272513 | 95-97 |
AAACA | 1532710 | 4.02571 | 4.9036403 | 1 |
TAAAA | 709770 | 3.5585287 | 4.454563 | 95-97 |
TTTTA | 690155 | 3.3806586 | 4.4793763 | 95-97 |
AAAAC | 1224775 | 3.2169092 | 4.1320267 | 2 |
GTTTT | 1213510 | 3.1216578 | 3.7350621 | 95-97 |