Basic Statistics
Measure | Value |
---|---|
Filename | HSV-KOSsyn_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 22860146 |
Filtered Sequences | 0 |
Sequence length | 101 |
%GC | 66 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 95342 | 0.41706645268144826 | No Hit |
Kmer Content
Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAAAA | 2918350 | 9.181697 | 11.485849 | 1 |
TTTTT | 2721940 | 8.817771 | 10.928355 | 95-97 |
ATAAA | 1471905 | 4.658052 | 5.964383 | 3 |
TTTAT | 1442770 | 4.6466336 | 6.2068777 | 1 |
TGTTT | 2427510 | 4.0196047 | 4.7253556 | 1 |
TAAAA | 1267915 | 4.0124965 | 4.7803144 | 1 |
AAACA | 2450445 | 4.0036564 | 4.892394 | 1 |
TTTTA | 1172930 | 3.7775779 | 4.6352396 | 1 |
AAAAC | 2102365 | 3.4349463 | 4.220314 | 1 |
TTATT | 1035855 | 3.3361094 | 4.5633755 | 1 |
GTTTT | 1997935 | 3.3082907 | 3.7799244 | 95-97 |
AATAA | 1017470 | 3.219928 | 4.51362 | 2 |
AAAAT | 996490 | 3.1535335 | 4.20158 | 1 |