Allele-Specific Inhibition of Histone Demethylases

Histone demethylases play a critical role in mammalian gene expression by removing methyl groups from lysine residues in degree- and site-specific manner. To specifically interrogate members and isoforms of this class of enzymes, we have developed demethylase variants with an expanded active site. The mutant enzymes are capable of performing lysine demethylation with wild-type proficiency, but are sensitive to inhibition by cofactor-competitive molecules embellished with a complementary steric “bump”. The selected inhibitors show more than 20-fold selectivity over the wild-type demethylase, thus overcoming issues typical to pharmacological and genetic approaches. The mutant–inhibitor pairs are shown to act on a physiologically relevant full-length substrate. By engineering a conserved amino acid to achieve member-specific perturbation, this study provides a general approach for studying histone demethylases in diverse cellular processes.

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Work Title Allele-Specific Inhibition of Histone Demethylases
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Open Access
Creators
  1. Shana Wagner
  2. Megan Waldman
  3. Simran Arora
  4. Sinan Wang
  5. Valerie Scott
  6. Kabirul Islam
License In Copyright (Rights Reserved)
Work Type Article
Publisher
  1. ChemBioChem
Publication Date May 2, 2019
Publisher Identifier (DOI)
  1. https://doi.org/10.1002/cbic.201800756
Deposited April 14, 2025

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Version 1
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  • Created
  • Added nihms-1032582-1.pdf
  • Added Creator Shana Wagner
  • Added Creator Megan Waldman
  • Added Creator Simran Arora
  • Added Creator Sinan Wang
  • Added Creator Valerie Scott
  • Added Creator Kabirul Islam
  • Published
  • Updated