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Created
February 17, 2022 18:38
by
sak89
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Added Creator Sheila Kitchen
February 17, 2022 18:39
by
sak89
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Added Creator Iliana Baums
February 17, 2022 18:39
by
sak89
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Added Creator Trinity Conn
February 17, 2022 18:39
by
sak89
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February 17, 2022 18:50
by
sak89
Description
Genotypes of acroporid corals converted into a variant call format (vcf) file and merged with other database samples at the time (n = 1898 in total). This file was used for detecting somatic mutations in parent and offspring sample of Acropora palmata.
This vcf file is to be used with code available at: https://github.com/skitchen19/Acropora_Mutation_Vasquez_Kitchen_et_al.
- Genotypes of acroporid corals converted into a variant call format (vcf) file and merged with other database samples at the time (n = 1898 in total). The STAGdb_04Jan2022.vcf file were used for detecting somatic mutations in parent and offspring sample of Acropora palmata. The Mixed_Samples.vcf file was for comparing genotyping results of 'pure' vs. mixtures of DNA of two A. palmata samples.
- These vcf files can be used with code available at: https://github.com/skitchen19/Acropora_Mutation_Vasquez_Kitchen_et_al.
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February 17, 2022 18:50
by
sak89
Description
- Genotypes of acroporid corals converted into a variant call format (vcf) file and merged with other database samples at the time (n = 1898 in total). The STAGdb_04Jan2022.vcf file were used for detecting somatic mutations in parent and offspring sample of Acropora palmata. The Mixed_Samples.vcf file was for comparing genotyping results of 'pure' vs. mixtures of DNA of two A. palmata samples.
These vcf files can be used with code available at: https://github.com/skitchen19/Acropora_Mutation_Vasquez_Kitchen_et_al.
- These vcf files can be used with code available here and at: https://github.com/skitchen19/Acropora_Mutation_Vasquez_Kitchen_et_al.
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Added
Mixed_Samples.vcf
February 17, 2022 18:53
by
sak89
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Added
Mixes_Sampinfo.xlsx
February 17, 2022 18:53
by
sak89
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Added
CNV_analysis.R
February 17, 2022 18:53
by
sak89
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Added
extractGentoype_idMutations.R
February 17, 2022 18:53
by
sak89
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Added
Genetic_Dist_Het_Recombination_array.R
February 17, 2022 18:53
by
sak89
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Added
BAF_LRR_plots_per_scaffold.R
February 17, 2022 18:53
by
sak89
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Added
apalm_list.txt
February 17, 2022 18:53
by
sak89
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Added
smutations.txt
February 17, 2022 18:53
by
sak89
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Added
heterozygosity.csv
February 17, 2022 18:53
by
sak89
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Added
Axiom_AcropSNP_coral_Annotation.r1.csv
February 17, 2022 18:53
by
sak89
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Added
STAGdb_04Jan2022.vcf
February 17, 2022 18:53
by
sak89
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Added
popInfo_STAGdb_04Jan2022.tabular
February 17, 2022 18:53
by
sak89
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February 17, 2022 18:59
by
sak89
Publisher
Description
Genotypes of acroporid corals converted into a variant call format (vcf) file and merged with other database samples at the time (n = 1898 in total). The STAGdb_04Jan2022.vcf file were used for detecting somatic mutations in parent and offspring sample of Acropora palmata. The Mixed_Samples.vcf file was for comparing genotyping results of 'pure' vs. mixtures of DNA of two A. palmata samples.
- Genotypes of acroporid corals converted into a variant call format (vcf) (n = 1898 samples). The STAGdb_04Jan2022.vcf file was used to detect somatic mutations in select parent and offspring samples of Acropora palmata from Curacao. The Mixed_Samples.vcf file was used to compare genotyping results of 'pure' DNA vs. 'mixed' DNA of two A. palmata samples.
- These vcf files can be used with code available here and at: https://github.com/skitchen19/Acropora_Mutation_Vasquez_Kitchen_et_al.
License
- https://creativecommons.org/licenses/by-nc/4.0/
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Published
February 17, 2022 18:59
by
sak89
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Updated
March 22, 2022 16:18
by
[unknown user]
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Updated
April 04, 2024 10:21
by
[unknown user]