The Molecular Mechanisms of Organic Acid Biosynthesis in Carabidae

This dataset was generated from a comparative transcriptomics project aiming to characterize the molecular mechanisms underlying defensive chemical biosynthesis in three species of Pennsylvanian Carabidae: Harpalus pensylvanicus, Platynus angustatus, and Pterostichus moestus. Specifically, this dataset contains the statistics generated from Illumina read trimming operations, transcriptome assembly and annotation data, transcriptome quality assessment data, transcript quantification and gene expression analysis results, functional enrichment analysis results, and gene family phylogenetic data. The scripts used to generate said data are also included. All untrimmed RNA-Seq data can be found at the associated link upon manuscript publication (SRA BioProject PRJNA705215).

Citation

Rork, Adam (2024). The Molecular Mechanisms of Organic Acid Biosynthesis in Carabidae [Data set]. Scholarsphere.

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Work Title The Molecular Mechanisms of Organic Acid Biosynthesis in Carabidae
Access
Open Access
Creators
  1. Adam Rork
Keyword
  1. Carabidae
  2. Evolution
  3. Biochemistry
  4. RNA-Seq
License CC BY-NC 4.0 (Attribution-NonCommercial)
Work Type Dataset
Acknowledgments
  1. Tanya Renner
  2. Sihang Xu
  3. Athula Attygalle
Publication Date July 5, 2024
Related URLs
  1. https://www.ncbi.nlm.nih.gov/bioproject/PRJNA705215
Deposited July 04, 2024

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Version 1
published

  • Created

    July 04, 2024 20:22 by amr483

  • Updated

    July 04, 2024 20:22 by [unknown user]

  • Updated Keyword, Related URLs, Description, and 1 more Show Changes

    July 04, 2024 20:34 by amr483

    Keyword
    • Carabidae, Evolution, Biochemistry, RNA-Seq
    Related URLs
    • https://www.ncbi.nlm.nih.gov/bioproject/PRJNA705215
    Description
    • This dataset was generated from a comparative transcriptomics project aiming to characterize the molecular mechanisms underlying defensive chemical biosynthesis in three species of Pennsylvanian Carabidae: Harpalus pensylvanicus, Platynus angustatus, and Pterostichus moestus. Specifically, this dataset contains the results of Illumina read trimming operations, transcriptome assembly and annotation, transcriptome quality assessments, gene expression analyses, functional enrichment analyses, and phylogenetic analysis of select gene families. The scripts used to generate said data are also included. All untrimmed RNA-Seq data can be found at the associated link (SRA BioProject PRJNA705215).
    Publication Date
    • 2024-07-05
  • Updated Acknowledgments Show Changes

    July 04, 2024 20:35 by amr483

    Acknowledgments
    • Tanya Renner, Sihang Xu, Athula Attygalle
  • Added Creator Adam Rork

    July 04, 2024 20:35 by amr483

  • Added SupplementaryData.tar.gz

    July 05, 2024 12:47 by amr483

  • Added README.txt

    July 05, 2024 12:54 by amr483

  • Updated Description, License Show Changes

    July 05, 2024 12:58 by amr483

    Description
    • This dataset was generated from a comparative transcriptomics project aiming to characterize the molecular mechanisms underlying defensive chemical biosynthesis in three species of Pennsylvanian Carabidae: Harpalus pensylvanicus, Platynus angustatus, and Pterostichus moestus. Specifically, this dataset contains the results of Illumina read trimming operations, transcriptome assembly and annotation, transcriptome quality assessments, gene expression analyses, functional enrichment analyses, and phylogenetic analysis of select gene families. The scripts used to generate said data are also included. All untrimmed RNA-Seq data can be found at the associated link (SRA BioProject PRJNA705215).
    • This dataset was generated from a comparative transcriptomics project aiming to characterize the molecular mechanisms underlying defensive chemical biosynthesis in three species of Pennsylvanian Carabidae: Harpalus pensylvanicus, Platynus angustatus, and Pterostichus moestus. Specifically, this dataset contains the statistics generated from Illumina read trimming operations, transcriptome assembly and annotation data, transcriptome quality assessment data, transcript quantification and gene expression analysis results, functional enrichment analysis results, and gene family phylogenetic data. The scripts used to generate said data are also included. All untrimmed RNA-Seq data can be found at the associated link upon manuscript publication (SRA BioProject PRJNA705215).
    License
    • https://creativecommons.org/licenses/by-nc/4.0/
  • Published

    July 05, 2024 12:58 by amr483

  • Updated

    July 05, 2024 22:04 by [unknown user]

Version 2
published

  • Created

    August 05, 2024 17:30 by amr483

  • Deleted SupplementaryData.tar.gz

    August 05, 2024 17:30 by amr483

  • Deleted README.txt

    August 05, 2024 18:10 by amr483

  • Added README.txt

    August 05, 2024 18:18 by amr483

  • Added SupplementaryData.tar.gz

    August 05, 2024 18:18 by amr483

  • Added SupplementaryTable.pdf

    August 05, 2024 18:18 by amr483

  • Updated License, Description, Related URLs Show Changes

    August 05, 2024 18:21 by amr483

    License
    • https://creativecommons.org/licenses/by-nc/4.0/
    • http://creativecommons.org/publicdomain/zero/1.0/
    Description
    • This dataset was generated from a comparative transcriptomics project aiming to characterize the molecular mechanisms underlying defensive chemical biosynthesis in three species of Pennsylvanian Carabidae: Harpalus pensylvanicus, Platynus angustatus, and Pterostichus moestus. Specifically, this dataset contains the statistics generated from Illumina read trimming operations, transcriptome assembly and annotation data, transcriptome quality assessment data, transcript quantification and gene expression analysis results, functional enrichment analysis results, and gene family phylogenetic data. The scripts used to generate said data are also included. All untrimmed RNA-Seq data can be found at the associated link upon manuscript publication (SRA BioProject PRJNA705215).
    • This dataset was generated from a comparative transcriptomics project aiming to characterize the molecular mechanisms underlying defensive chemical biosynthesis in three species of Pennsylvanian Carabidae: Harpalus pensylvanicus, Platynus angustatus, and Pterostichus moestus. This dataset contains: Illumina read trimming statistics, transcriptome assembly and annotation data, transcriptome quality assessment data, transcript quantification and gene expression analysis data, functional enrichment analysis data, and gene family phylogenetic data. Scripts used to generate said data are included along with software information, and untrimmed RNA-Seq data can be found at the associated BioProject: PRJNA705215.
    Related URLs
    • https://www.ncbi.nlm.nih.gov/bioproject/PRJNA705215
    • https://www.ncbi.nlm.nih.gov/bioproject/PRJNA705215, https://doi.org/10.5061/dryad.dr7sqvb6v
  • Published

    August 05, 2024 18:21 by amr483

Version 3
published

  • Created

    August 05, 2024 20:46 by amr483

  • Deleted SupplementaryData.tar.gz

    August 05, 2024 20:49 by amr483

  • Deleted README.txt

    August 05, 2024 20:50 by amr483

  • Added README.txt

    August 05, 2024 21:00 by amr483

  • Added SupplementaryData.tar.gz

    August 05, 2024 21:00 by amr483

  • Published

    August 05, 2024 21:00 by amr483

  • Updated

    August 05, 2024 22:03 by [unknown user]

Version 4
published

  • Created

    September 18, 2024 13:05 by amr483

  • Updated Related URLs Show Changes

    September 18, 2024 13:09 by amr483

    Related URLs
    • https://www.ncbi.nlm.nih.gov/bioproject/PRJNA705215, https://doi.org/10.5061/dryad.dr7sqvb6v
    • https://www.ncbi.nlm.nih.gov/bioproject/PRJNA705215
  • Deleted README.txt

    September 18, 2024 13:09 by amr483

  • Added README.txt

    September 18, 2024 13:10 by amr483

  • Published

    September 18, 2024 13:11 by amr483

  • Updated

    September 18, 2024 22:04 by [unknown user]

  • Updated Description Show Changes

    January 27, 2025 10:16 by avs5190

    Description
    • This dataset was generated from a comparative transcriptomics project aiming to characterize the molecular mechanisms underlying defensive chemical biosynthesis in three species of Pennsylvanian Carabidae: Harpalus pensylvanicus, Platynus angustatus, and Pterostichus moestus. This dataset contains: Illumina read trimming statistics, transcriptome assembly and annotation data, transcriptome quality assessment data, transcript quantification and gene expression analysis data, functional enrichment analysis data, and gene family phylogenetic data. Scripts used to generate said data are included along with software information, and untrimmed RNA-Seq data can be found at the associated BioProject: PRJNA705215.
    • This dataset was generated from a comparative transcriptomics project aiming to characterize the molecular mechanisms underlying defensive chemical biosynthesis in three species of Pennsylvanian Carabidae: _Harpalus pensylvanicus_, _Platynus angustatus_, and _Pterostichus moestus_. This dataset contains: Illumina read trimming statistics, transcriptome assembly and annotation data, transcriptome quality assessment data, transcript quantification and gene expression analysis data, functional enrichment analysis data, and gene family phylogenetic data. Scripts used to generate said data are included along with software information, and untrimmed RNA-Seq data can be found at the associated BioProject: PRJNA705215.