05 Population Genetic Analysis of SNPs

These data files and software estimate Tajima's D/|Dmin|, Mean Derived Allele Frequency, Population Specific Branch Length, and iHS for genes across chromosome two and three in Drosophila pseudoobscura.

Citation

Schaeffer, Stephen; Fuller, Zachary Lewis; Haynes, Gwylim D.; Richards, Stephen (). 05 Population Genetic Analysis of SNPs [Data set]. Scholarsphere.

Files

  • 05_Contents_Population_Genetic_Analysis_of_SNPs.docx

    size: 16.8 KB | mime_type: application/vnd.openxmlformats-officedocument.wordprocessingml.document | date: 2017-10-03

  • AR_BP.txt

    size: 49 Bytes | mime_type: application/octet-stream | date: 2017-10-03 | sha256: 29be645

  • AR_Coor.txt

    size: 75.1 KB | mime_type: application/octet-stream | date: 2017-10-03 | sha256: b57ccef

  • calc_iHS.py

    size: 7.69 KB | mime_type: text/x-matlab | date: 2017-10-03

  • CH_BP.txt

    size: 51 Bytes | mime_type: application/octet-stream | date: 2017-10-03 | sha256: f9928a3

  • CH_Coor.txt

    size: 75.2 KB | mime_type: application/octet-stream | date: 2017-10-03 | sha256: 0aa51a2

  • Chr2_BP.txt

    size: 13 Bytes | mime_type: application/octet-stream | date: 2017-10-03 | sha256: 977ebfb

  • Chr2_Coor.txt

    size: 96.5 KB | mime_type: application/octet-stream | date: 2017-10-03 | sha256: f1e9ca3

  • Chr3_AllGene_Coords.txt

    size: 72.5 KB | mime_type: application/octet-stream | date: 2017-10-03 | sha256: 6a598ab

  • Chr3_FB_DAF_U_AR.tsv

    size: 2.34 MB | mime_type: application/octet-stream | date: 2017-10-03 | sha256: dd9aa3b

  • Chr3_FB_DAF_U_CH.tsv

    size: 1.68 MB | mime_type: application/octet-stream | date: 2017-10-03 | sha256: e583e21

  • Chr3_FB_DAF_U_CU.tsv

    size: 836 KB | mime_type: application/octet-stream | date: 2017-10-03 | sha256: 8b47b2e

  • Chr3_FB_DAF_U_PP.tsv

    size: 2.48 MB | mime_type: application/octet-stream | date: 2017-10-03 | sha256: 014e48c

  • Chr3_FB_DAF_U_Raw_AR_Permute_SR03.csv

    size: 216 KB | mime_type: application/octet-stream | date: 2017-10-03 | sha256: 05e9133

  • Chr3_FB_DAF_U_Raw_CH_Permute_SR03.csv

    size: 216 KB | mime_type: application/octet-stream | date: 2017-10-03 | sha256: ac40c1a

  • Chr3_FB_DAF_U_Raw_PP_Permute_SR03.csv

    size: 216 KB | mime_type: application/octet-stream | date: 2017-10-03 | sha256: 54e45b8

  • Chr3_FB_DAF_U_Raw_ST_Permute_SR03.csv

    size: 216 KB | mime_type: application/octet-stream | date: 2017-10-03 | sha256: e812b49

  • Chr3_FB_DAF_U_Raw_TL_Permute_SR03.csv

    size: 216 KB | mime_type: application/octet-stream | date: 2017-10-03 | sha256: dfb8197

  • Chr3_FB_DAF_U_ST.tsv

    size: 1.05 MB | mime_type: application/octet-stream | date: 2017-10-03 | sha256: ef52283

  • Chr3_FB_DAF_U_TL.tsv

    size: 1.94 MB | mime_type: application/octet-stream | date: 2017-10-03 | sha256: ffec6a3

  • Chr3_FB_Tajima_D_Dmin_AR_U_Permute_SR_03.csv

    size: 208 KB | mime_type: application/octet-stream | date: 2017-10-03 | sha256: 7fda9af

  • Chr3_FB_Tajima_D_Dmin_CH_U_Permute_SR_03.csv

    size: 208 KB | mime_type: application/octet-stream | date: 2017-10-03 | sha256: 660f6c1

  • Chr3_FB_Tajima_D_Dmin_PP_U_Permute_SR_03.csv

    size: 208 KB | mime_type: application/octet-stream | date: 2017-10-03 | sha256: c110090

  • Chr3_FB_Tajima_D_Dmin_ST_U_Permute_SR_03.csv

    size: 207 KB | mime_type: application/octet-stream | date: 2017-10-03 | sha256: 63c68f5

  • Chr3_FB_Tajima_D_Dmin_TL_U_Permute_SR_03.csv

    size: 208 KB | mime_type: application/octet-stream | date: 2017-10-03 | sha256: 085011c

  • chr3_regions.txt

    size: 71 Bytes | mime_type: application/octet-stream | date: 2017-10-03 | sha256: 455ecfb

  • CU_BP.txt

    size: 50 Bytes | mime_type: application/octet-stream | date: 2017-10-03 | sha256: 302ca30

  • CU_Coor.txt

    size: 75.4 KB | mime_type: application/octet-stream | date: 2017-10-03 | sha256: 9e8f130

  • dpse_populations.txt

    size: 640 Bytes | mime_type: application/octet-stream | date: 2017-10-03 | sha256: 98b734c

  • McGaugh_Chr2_snps.tsv

    size: 30 MB | mime_type: application/octet-stream | date: 2017-10-03 | sha256: f0e1dcf

  • McGaugh_Tajima_DAF_Data.tsv

    size: 7.2 MB | mime_type: application/octet-stream | date: 2017-10-03 | sha256: ea52622

  • ngcdeps.f

    size: 7.25 KB | mime_type: application/octet-stream | date: 2017-10-03 | sha256: 1be3922

  • NG_DAF_Permute_Chr2_McGaugh.f

    size: 10.4 KB | mime_type: application/octet-stream | date: 2017-10-03 | sha256: aa1f3bc

  • NG_Tajima_D_Dmin_Ratio_Permute_Chr2_McGaugh.f

    size: 11.6 KB | mime_type: application/octet-stream | date: 2017-10-03 | sha256: e364f96

  • NG_Tajima_D_Dmin_Ratio_Permute.f

    size: 9.55 KB | mime_type: application/octet-stream | date: 2017-10-03 | sha256: 794ce5a

  • PP_BP.txt

    size: 49 Bytes | mime_type: application/octet-stream | date: 2017-10-03 | sha256: f8a1233

  • PP_Coor.txt

    size: 75.3 KB | mime_type: application/octet-stream | date: 2017-10-03 | sha256: 11d8709

  • psbl_stats.py

    size: 11.4 KB | mime_type: application/octet-stream | date: 2017-10-03 | sha256: bd73f91

  • ST_BP.txt

    size: 51 Bytes | mime_type: application/octet-stream | date: 2017-10-03 | sha256: 669bf19

  • ST_Coor.txt

    size: 75.2 KB | mime_type: application/octet-stream | date: 2017-10-03 | sha256: 9d5f5f7

  • TL_BP.txt

    size: 49 Bytes | mime_type: application/octet-stream | date: 2017-10-03 | sha256: 8875eb8

  • TL_Coor.txt

    size: 75.1 KB | mime_type: application/octet-stream | date: 2017-10-03 | sha256: 6cc4e0b

Metadata

Work Title 05 Population Genetic Analysis of SNPs
Access
Open Access
Creators
  1. Schaeffer, Stephen Wade
  2. Fuller, Zachary Lewis
  3. Haynes, Gwylim D.
  4. Richards, Stephen
Keyword
  1. Tajima's D, Mean Derived Allele Frequency, Population Specific Branch Length, iHS
License CC BY 4.0 (Attribution)
Work Type Dataset
Deposited September 28, 2017

Versions

Analytics

Collections

Work History

Version 1
published

  • Created

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Added McGaugh_Tajima_DAF_Data.tsv

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Added NG_Tajima_D_Dmin_Ratio_Permute_Chr2_McGaugh.f

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Added AR_Coor.txt

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Added Chr3_FB_Tajima_D_Dmin_TL_U_Permute_SR_03.csv

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Added Chr3_FB_DAF_U_TL.tsv

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Added Chr3_FB_Tajima_D_Dmin_AR_U_Permute_SR_03.csv

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Added PP_BP.txt

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Added Chr3_FB_Tajima_D_Dmin_PP_U_Permute_SR_03.csv

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Added CU_BP.txt

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Added Chr3_FB_DAF_U_CH.tsv

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Added Chr3_FB_Tajima_D_Dmin_CH_U_Permute_SR_03.csv

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Added 05_Contents_Population_Genetic_Analysis_of_SNPs.docx

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Added Chr3_FB_DAF_U_Raw_AR_Permute_SR03.csv

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Added Chr3_FB_DAF_U_Raw_ST_Permute_SR03.csv

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Added Chr3_FB_Tajima_D_Dmin_ST_U_Permute_SR_03.csv

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Added TL_Coor.txt

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Added Chr2_Coor.txt

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Added Chr3_FB_DAF_U_Raw_PP_Permute_SR03.csv

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Added Chr3_FB_DAF_U_ST.tsv

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Added CH_Coor.txt

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Added AR_BP.txt

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Added chr3_regions.txt

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Added Chr3_FB_DAF_U_AR.tsv

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Added NG_Tajima_D_Dmin_Ratio_Permute.f

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Added ST_Coor.txt

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Added Chr3_AllGene_Coords.txt

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Added Chr3_FB_DAF_U_PP.tsv

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Added CU_Coor.txt

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Added Chr3_FB_DAF_U_Raw_TL_Permute_SR03.csv

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Added PP_Coor.txt

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Added NG_DAF_Permute_Chr2_McGaugh.f

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Added Chr2_BP.txt

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Added ST_BP.txt

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Added dpse_populations.txt

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Added ngcdeps.f

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Added TL_BP.txt

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Added psbl_stats.py

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Added calc_iHS.py

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Added Chr3_FB_DAF_U_Raw_CH_Permute_SR03.csv

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Added CH_BP.txt

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Added Chr3_FB_DAF_U_CU.tsv

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Added McGaugh_Chr2_snps.tsv

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Added Creator Schaeffer, Stephen Wade

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Added Creator Fuller, Zachary Lewis

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Added Creator Haynes, Gwylim D.

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Added Creator Richards, Stephen

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Published

    November 16, 2020 22:20 by Scholarsphere 4 Migration

  • Updated

    April 04, 2024 10:19 by [unknown user]