05 Population Genetic Analysis of SNPs

These data files and software estimate Tajima's D/|Dmin|, Mean Derived Allele Frequency, Population Specific Branch Length, and iHS for genes across chromosome two and three in Drosophila pseudoobscura.

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Work Title 05 Population Genetic Analysis of SNPs
Access
Open Access
Creators
  1. Schaeffer, Stephen Wade
  2. Fuller, Zachary Lewis
  3. Haynes, Gwylim D.
  4. Richards, Stephen
Keyword
  1. Tajima's D, Mean Derived Allele Frequency, Population Specific Branch Length, iHS
License Attribution 4.0 International (CC BY 4.0)
Work Type Dataset
Deposited September 28, 2017

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Work History

Version 1
published

  • Created
  • Added McGaugh_Tajima_DAF_Data.tsv
  • Added NG_Tajima_D_Dmin_Ratio_Permute_Chr2_McGaugh.f
  • Added AR_Coor.txt
  • Added Chr3_FB_Tajima_D_Dmin_TL_U_Permute_SR_03.csv
  • Added Chr3_FB_DAF_U_TL.tsv
  • Added Chr3_FB_Tajima_D_Dmin_AR_U_Permute_SR_03.csv
  • Added PP_BP.txt
  • Added Chr3_FB_Tajima_D_Dmin_PP_U_Permute_SR_03.csv
  • Added CU_BP.txt
  • Added Chr3_FB_DAF_U_CH.tsv
  • Added Chr3_FB_Tajima_D_Dmin_CH_U_Permute_SR_03.csv
  • Added 05_Contents_Population_Genetic_Analysis_of_SNPs.docx
  • Added Chr3_FB_DAF_U_Raw_AR_Permute_SR03.csv
  • Added Chr3_FB_DAF_U_Raw_ST_Permute_SR03.csv
  • Added Chr3_FB_Tajima_D_Dmin_ST_U_Permute_SR_03.csv
  • Added TL_Coor.txt
  • Added Chr2_Coor.txt
  • Added Chr3_FB_DAF_U_Raw_PP_Permute_SR03.csv
  • Added Chr3_FB_DAF_U_ST.tsv
  • Added CH_Coor.txt
  • Added AR_BP.txt
  • Added chr3_regions.txt
  • Added Chr3_FB_DAF_U_AR.tsv
  • Added NG_Tajima_D_Dmin_Ratio_Permute.f
  • Added ST_Coor.txt
  • Added Chr3_AllGene_Coords.txt
  • Added Chr3_FB_DAF_U_PP.tsv
  • Added CU_Coor.txt
  • Added Chr3_FB_DAF_U_Raw_TL_Permute_SR03.csv
  • Added PP_Coor.txt
  • Added NG_DAF_Permute_Chr2_McGaugh.f
  • Added Chr2_BP.txt
  • Added ST_BP.txt
  • Added dpse_populations.txt
  • Added ngcdeps.f
  • Added TL_BP.txt
  • Added psbl_stats.py
  • Added calc_iHS.py
  • Added Chr3_FB_DAF_U_Raw_CH_Permute_SR03.csv
  • Added CH_BP.txt
  • Added Chr3_FB_DAF_U_CU.tsv
  • Added McGaugh_Chr2_snps.tsv
  • Added Creator Schaeffer, Stephen Wade
  • Added Creator Fuller, Zachary Lewis
  • Added Creator Haynes, Gwylim D.
  • Added Creator Richards, Stephen
  • Published