Mountain Lion mtDNA genome USA MAFFT alignment file

This alignment file contains five novel mitochondrial DNA (mtDNA) genomes of extinct Pennsylvania mountain lions (Puma concolor), two complete mtDNA genomes from Texas and Florida mountain lions available on Genbank (accession numbers NC_016470 and KP202261 respectively), and 14 mtDNA sequences on Genbank produced by Culver et al., who only sequenced the 16s rRNA, ATPase8, and NADH dehydrogenase subunit 5 gene regions. Sequences were aligned using MAFFT version 7 default settings with the E-INS-i iterative refinement method, which is best for a small number of sequences with multiple conserved domains and large gaps, and verified visually. References:

Culver, M., Johnson, W. E., Pecon-Slattery, J. & O’Brien, S. J. Genomic ancestry of the American puma (Puma concolor). J. Hered. 91, 186–97 (2000).

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Work Title Mountain Lion mtDNA genome USA MAFFT alignment file
Access
Open Access
Creators
  1. Perry, George H
Keyword
  1. Nittany Lion genome
License Attribution 3.0 United States
Work Type Dataset
Deposited March 27, 2017

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Version 1
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  • Created
  • Added 69p290928x_version1_Mt_Lion_Samples_Texas_Florida_MAFFT_aln_new.fasta
  • Added Creator Perry, George H
  • Published