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  1. Powdery Mildew Manuscript Data Set.xlsx [Download]

    Title: Powdery Mildew Manuscript Data Set.xlsx
    Depositor: Jacquelyn Elizabeth Harth
    Creator:
    • Harth, Jacquelyn Elizabeth
    Description:
    Keywords: Powdery Mildew Experiment Field Data
    Date Uploaded: 2017-03-17
  2. Model4_LoSedHiVar.zip [Download]

    Title: Model4_LoSedHiVar.zip
    Depositor: Shelia Marie Trampush
    Creator:
    • Trampush, Shelia Marie
    Description:
    Keywords: computer model, PETM, sedimentation
    Date Uploaded: 2017-03-14
  3. Model3_LoSedLoVar.zip [Download]

    Title: Model3_LoSedLoVar.zip
    Depositor: Shelia Marie Trampush
    Creator:
    • Trampush, Shelia Marie
    Description:
    Keywords: computer model, PETM, sedimentation
    Date Uploaded: 2017-03-14
  4. Model2_HiSedHiVar.zip [Download]

    Title: Model2_HiSedHiVar.zip
    Depositor: Shelia Marie Trampush
    Creator:
    • Trampush, Shelia Marie
    Description:
    Keywords: computer model, PETM, sedimentation
    Date Uploaded: 2017-03-14
  5. Model1_HiSedLoVar.zip [Download]

    Title: Model1_HiSedLoVar.zip
    Depositor: Shelia Marie Trampush
    Creator:
    • Trampush, Shelia Marie
    Description:
    Keywords: computer model, PETM, Sedimentation
    Date Uploaded: 2017-03-14
  6. ModelOutput_README.txt [Download]

    Title: ModelOutput_README.txt
    Depositor: Shelia Marie Trampush
    Creator:
    • Trampush, Shelia Marie
    Description:
    Keywords: PETM, sedimentation, model
    Date Uploaded: 2017-03-02
  7. Single droplet condensation heat transfer simulation data [Download]

    Title: Single droplet condensation heat transfer simulation data
    Depositor: Alexander S Rattner
    Creator:
    • Sanjay Adhikari
    • Alexander S Rattner
    Description: This spreadsheet presents simulation data for single droplet condensation heat transfer simulations described in the associated manuscript titled "Condensation Heat Transfer in a Sessile Droplet at Varying Biot Number and Contact Angle".
    Keywords: condensation; heat transfer; dropwise condensation
    Date Uploaded: 2017-02-17
  8. README.txt [Download]

    Title: README.txt
    Depositor: Robert K Olendorf
    Creator:
    • Parkinson, John
    • Baums, Illiana
    Description: This project studied the effects of thermal stress on gene expression in the Staghorn coral (Acropora cervicornis). At four seasonal time points, tissue from at least ten colonies at three nurseries were exposed to three temperature treatments for one hour then preserved in RNALater. RNA was extracted with TRI Reagent then cleaned with a Qiagen RNEasy kit. A subset of samples were chosen and pooled for RNA-Seq. The subset included genotypes from 2 of the 3 nurseries (Upper Keys and Lower Keys), 2 of the 4 seasonal collections (Summer 1 and Winter 1), and all 3 temperature treatments (ambient, hot, and cold), resulting in 12 libraries. For each library, RNA from 7 of the 10+ genotypes at each nursery were pooled (84 samples total). Following the manufacturer’s protocol, 150 bp single reads were generated from oligo(dT)-selected total RNA using the Illumina TruSeq Stranded mRNA HT Kit. mRNA sequencing libraries were individually barcoded, multiplexed in equal quantities, and run on three lanes of the Illumina HiSeq 2000 platform. The data were demultiplexed into 12 individual library files.
    Keywords: Staghorn coral, Acropora cervicornus, functional genomics, heat stress, RNA squencing
    Date Uploaded: 2017-02-17
  9. P04_GAGATTCC_raw_merged.fastq.gz [Download]

    Title: P04_GAGATTCC_raw_merged.fastq.gz
    Depositor: Robert K Olendorf
    Creator:
    • Parkinson, John
    • Baums, Illiana
    Description: This project studied the effects of thermal stress on gene expression in the Staghorn coral (Acropora cervicornis). At four seasonal time points, tissue from at least ten colonies at three nurseries were exposed to three temperature treatments for one hour then preserved in RNALater. RNA was extracted with TRI Reagent then cleaned with a Qiagen RNEasy kit. A subset of samples were chosen and pooled for RNA-Seq. The subset included genotypes from 2 of the 3 nurseries (Upper Keys and Lower Keys), 2 of the 4 seasonal collections (Summer 1 and Winter 1), and all 3 temperature treatments (ambient, hot, and cold), resulting in 12 libraries. For each library, RNA from 7 of the 10+ genotypes at each nursery were pooled (84 samples total). Following the manufacturer’s protocol, 150 bp single reads were generated from oligo(dT)-selected total RNA using the Illumina TruSeq Stranded mRNA HT Kit. mRNA sequencing libraries were individually barcoded, multiplexed in equal quantities, and run on three lanes of the Illumina HiSeq 2000 platform. The data were demultiplexed into 12 individual library files.
    Keywords: Staghorn coral, Acropora cervicornus, functional genomics, heat stress, RNA sequencing
    Date Uploaded: 2017-02-17
  10. P12_AGCGATAG_raw_merged.fastq.gz [Download]

    Title: P12_AGCGATAG_raw_merged.fastq.gz
    Depositor: Robert K Olendorf
    Creator:
    • Parkinson, John
    • Baums, Illiana
    Description: Open Access This project studied the effects of thermal stress on gene expression in the Staghorn coral (Acropora cervicornis). At four seasonal time points, tissue from at least ten colonies at three nurseries were exposed to three temperature treatments for one hour then preserved in RNALater. RNA was extracted with TRI Reagent then cleaned with a Qiagen RNEasy kit. A subset of samples were chosen and pooled for RNA-Seq. The subset included genotypes from 2 of the 3 nurseries (Upper Keys and Lower Keys), 2 of the 4 seasonal collections (Summer 1 and Winter 1), and all 3 temperature treatments (ambient, hot, and cold), resulting in 12 libraries. For each library, RNA from 7 of the 10+ genotypes at each nursery were pooled (84 samples total). Following the manufacturer’s protocol, 150 bp single reads were generated from oligo(dT)-selected total RNA using the Illumina TruSeq Stranded mRNA HT Kit. mRNA sequencing libraries were individually barcoded, multiplexed in equal quantities, and run on three lanes of the Illumina HiSeq 2000 platform. The data were demultiplexed into 12 individual library files.
    Keywords: Staghorn coral, Acropora cervicornus, functional genomics, heat stress, RNA sequencing
    Date Uploaded: 2017-02-16